Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E1029546.3b.6a with 19 members (malonyl coa-acyl carrier protein transacylase)

LUCA / Eukaryota / Viridiplantae / Streptophyta / Streptophytina / Embryophyta / Tracheophyta /

... /

Euphyllophyta / Spermatophyta / Magnoliopsida / Mesangiospermae / Pentapetalae / rosids /

fabids /

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

89.8%

This HOG has 160 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0983615	c__Gammaproteobacteria	99		99.0%	2
HOG:E0892799	g__Streptomyces	34		38.2%	2
HOG:E0984668	c__Gammaproteobacteria	34		26.5%	2
HOG:E0872382	c__Cyanobacteriia	27		22.2%	2
HOG:E0824258	Eukaryota	26		50.0%	2
HOG:E1014667	Bacteria	24		75.0%	2
HOG:E0982682	o__Enterobacterales	23		30.4%	2
HOG:E0821074	Eukaryota	22		45.5%	2
HOG:E0403244	Saccharomycetaceae	17		76.5%	2
HOG:E0565762	Chromadorea	17		17.6%	2
HOG:E0984666	c__Gammaproteobacteria	17		17.6%	2
HOG:E0979530	f__Enterobacteriaceae	16		37.5%	2
HOG:E1034993	LUCA	11		36.4%	2
HOG:E0364074	Pucciniomycotina	9		33.3%	2
HOG:E0460676	Hypocreomycetidae	9		88.9%	2
HOG:E0469688	leotiomyceta	9		44.4%	2
HOG:E0483623	Fungi	9		44.4%	2
HOG:E1025820	Bacteria	9		88.9%	2
HOG:E0348228	Ustilaginomycotina	6		66.7%	2
HOG:E0821035	Eukaryota	6		83.3%	2
HOG:E0366143	Tremellomycetes	5		80.0%	2
HOG:E0480368	Dikarya	5		40.0%	2
HOG:E0567130	Chromadorea	5		100.0%	2
HOG:E0130945	Sarcocystidae	4		100.0%	2
HOG:E0453122	Trichoderma	4		50.0%	2

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